[mlpack] issue with mlpack Python bindings on Mac OsX

[Frodo Jedi]

Hi Ryan,
thanks.

This is the output of cmake .. from a empty build directory:


-- The C compiler identification is AppleClang 9.0.0.9000039
-- The CXX compiler identification is AppleClang 9.0.0.9000039
-- Check for working C compiler:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
-- Check for working C compiler:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
-- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
-- Check for working CXX compiler:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
-- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- cotire 1.7.10 loaded.
-- Found Armadillo: /usr/local/lib/libarmadillo.dylib (found suitable
version "9.100.5", minimum required is "6.500.0")
-- Armadillo libraries: /usr/local/lib/libarmadillo.dylib
-- Boost version: 1.68.0
-- Found the following Boost libraries:
--   program_options
--   unit_test_framework
--   serialization
-- Could NOT find OpenMP_C (missing: OpenMP_C_FLAGS OpenMP_C_LIB_NAMES)
-- Could NOT find OpenMP_CXX (missing: OpenMP_CXX_FLAGS
OpenMP_CXX_LIB_NAMES)
-- Could NOT find OpenMP (missing: OpenMP_C_FOUND OpenMP_CXX_FOUND)
-- Found Git: /usr/local/bin/git (found version "2.19.0")
-- Regenerating arma_config.hpp.
CMake Warning at CMakeLists.txt:425 (message):
  txt2man not found; man pages will not be generated.


-- Found PythonInterp: /usr/local/bin/python (found version "2.7.15")
-- Found Python: /usr/local/bin/python
-- Found PY_distutils: /usr/local/Cellar/python at 2
/2.7.15_1/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils
-- Found PY_Cython: /usr/local/lib/python2.7/site-packages/Cython
-- Found PY_numpy: /usr/local/lib/python2.7/site-packages/numpy
-- Found PY_pandas: /usr/local/lib/python2.7/site-packages/pandas
-- CMAKE_PYTHON_PATH is /usr/local/lib/python2.7/site-packages/
-- We will call setup.py install with --prefix=/usr/local --root=
-- Working directory will be
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- CXX target mlpack cotired.
-- CXX target mlpack_test cotired.
-- Found Doxygen: /usr/local/bin/doxygen (found version "1.8.14") found
components:  doxygen missing components:  dot
-- Found PkgConfig: /usr/local/bin/pkg-config (found version "0.29.2")
-- Configuring done
-- Generating done
-- Build files have been written to:
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build


Here you go the output of sudo make install (without having run make -j4
before... if I correctly understood you wanted me to not run make).
As you can see there is the line "no PYTHONPATH in os.environ"



Scanning dependencies of target mlpack_arma_config
[  0%] Updating arma_config.hpp (if necessary)
-- Regenerating arma_config.hpp.
[  0%] Built target mlpack_arma_config
Scanning dependencies of target mlpack_headers
Moving header files to include/mlpack/
[  0%] Built target mlpack_headers
Scanning dependencies of target pkgconfig
[  1%] Generating mlpack.pc (pkg-config) file.
[  1%] Built target pkgconfig
[  1%] Generating CXX prefix source src/mlpack/cotire/mlpack_CXX_prefix.cxx
[  1%] Generating CXX prefix header src/mlpack/cotire/mlpack_CXX_prefix.hxx
[  1%] Building CXX precompiled header
src/mlpack/cotire/mlpack_CXX_prefix.hxx.pch
Scanning dependencies of target mlpack
[  1%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/bindings/cli/print_help.cpp.o
[  1%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/bindings/tests/clean_memory.cpp.o
[  2%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/data/load_csv.cpp.o
[  2%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/data/load.cpp.o

[  2%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/dists/discrete_distribution.cpp.o
[  2%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/dists/gaussian_distribution.cpp.o
[  2%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/dists/laplace_distribution.cpp.o
[  3%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/dists/regression_distribution.cpp.o
[  3%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/dists/gamma_distribution.cpp.o
[  3%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/kernels/epanechnikov_kernel.cpp.o
[  3%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/kernels/pspectrum_string_kernel.cpp.o
[  3%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/math/columns_to_blocks.cpp.o
[  3%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/math/lin_alg.cpp.o
[  4%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/math/random.cpp.o
[  4%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/math/random_basis.cpp.o
[  4%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/ada_delta/ada_delta.cpp.o
[  4%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/ada_grad/ada_grad.cpp.o
[  4%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/aug_lagrangian/aug_lagrangian.cpp.o
[  5%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/aug_lagrangian/aug_lagrangian_test_functions.cpp.o
[  5%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/gradient_descent/gradient_descent.cpp.o
[  5%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/gradient_descent/test_function.cpp.o
[  5%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/lbfgs/lbfgs.cpp.o
[  5%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/problems/booth_function.cpp.o
[  5%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/problems/bukin_function.cpp.o
[  6%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/problems/colville_function.cpp.o
[  6%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/problems/drop_wave_function.cpp.o
[  6%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/problems/easom_function.cpp.o
[  6%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/problems/eggholder_function.cpp.o
[  6%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/problems/generalized_rosenbrock_function.cpp.o
[  7%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/problems/matyas_function.cpp.o
[  7%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/problems/mc_cormick_function.cpp.o
[  7%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/problems/rastrigin_function.cpp.o
[  7%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/problems/rosenbrock_wood_function.cpp.o
[  7%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/problems/rosenbrock_function.cpp.o
[  7%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/problems/schwefel_function.cpp.o
[  8%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/problems/sgd_test_function.cpp.o
[  8%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/problems/sphere_function.cpp.o
[  8%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/problems/styblinski_tang_function.cpp.o
[  8%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/problems/wood_function.cpp.o
[  8%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/proximal/proximal.cpp.o
[  9%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/rmsprop/rmsprop.cpp.o
[  9%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/smorms3/smorms3.cpp.o
[  9%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/tree/cosine_tree/cosine_tree.cpp.o
[  9%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/util/backtrace.cpp.o
[  9%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/util/cli.cpp.o
[  9%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/util/log.cpp.o

[ 10%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/util/prefixedoutstream.cpp.o
[ 10%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/util/program_doc.cpp.o
[ 10%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/util/singletons.cpp.o
[ 10%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/util/timers.cpp.o
[ 10%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/util/version.cpp.o
[ 11%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/adaboost/adaboost_model.cpp.o
[ 11%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/block_krylov_svd/randomized_block_krylov_svd.cpp.o
[ 11%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/cf/cf.cpp.o
[ 11%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/fastmks/fastmks_model.cpp.o
[ 11%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/gmm/gmm.cpp.o
[ 11%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/hoeffding_trees/hoeffding_tree_model.cpp.o
[ 12%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/lars/lars.cpp.o
[ 12%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/linear_regression/linear_regression.cpp.o
[ 12%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/local_coordinate_coding/lcc.cpp.o
[ 12%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/matrix_completion/matrix_completion.cpp.o
[ 12%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/neighbor_search/unmap.cpp.o
[ 13%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/quic_svd/quic_svd.cpp.o
[ 13%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/radical/radical.cpp.o
[ 13%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/randomized_svd/randomized_svd.cpp.o
[ 13%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/rann/ra_util.cpp.o
[ 13%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/softmax_regression/softmax_regression.cpp.o
[ 14%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/softmax_regression/softmax_regression_function.cpp.o
[ 14%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/sparse_autoencoder/sparse_autoencoder.cpp.o
[ 14%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/sparse_autoencoder/sparse_autoencoder_function.cpp.o
[ 14%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/sparse_autoencoder/maximal_inputs.cpp.o
[ 14%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/sparse_coding/sparse_coding.cpp.o
[ 14%] Linking CXX shared library ../../lib/libmlpack.dylib
[ 14%] Built target mlpack
Scanning dependencies of target python_copy
no PYTHONPATH in os.environ
running build
running build_py
creating build
creating build/lib
creating build/lib/mlpack
copying
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/__init__.py
-> build/lib/mlpack
copying
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/matrix_utils.py
-> build/lib/mlpack
[ 14%] Built target python_copy
[ 14%] Generating ../../bindings/python/generate_pyx_sparse_coding.cpp
Scanning dependencies of target generate_pyx_sparse_coding
[ 14%] Building CXX object
src/mlpack/methods/sparse_coding/CMakeFiles/generate_pyx_sparse_coding.dir/__/__/bindings/python/generate_pyx_sparse_coding.cpp.o
[ 15%] Linking CXX executable ../../../../bin/generate_pyx_sparse_coding
[ 15%] Built target generate_pyx_sparse_coding
Scanning dependencies of target build_pyx_sparse_coding
[ 15%] Building Cython binding sparse_coding.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/sparse_coding.pyx
to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/sparse_coding.cpp
building 'mlpack.sparse_coding' extension
creating build/temp.macosx-10.12-x86_64-2.7
creating build/temp.macosx-10.12-x86_64-2.7/Users
creating build/temp.macosx-10.12-x86_64-2.7/Users/frodo
creating build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents
creating
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning
creating
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4
creating
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build
creating
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src
creating
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack
creating
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings
creating
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python
creating
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/sparse_coding.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/sparse_coding.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/sparse_coding.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
creating build/lib.macosx-10.12-x86_64-2.7
creating build/lib.macosx-10.12-x86_64-2.7/mlpack
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/sparse_coding.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/sparse_coding.so
[ 15%] Built target build_pyx_sparse_coding
[ 16%] Generating ../../bindings/python/generate_pyx_decision_stump.cpp
Scanning dependencies of target generate_pyx_decision_stump
[ 16%] Building CXX object
src/mlpack/methods/decision_stump/CMakeFiles/generate_pyx_decision_stump.dir/__/__/bindings/python/generate_pyx_decision_stump.cpp.o
[ 16%] Building CXX object
src/mlpack/methods/decision_stump/CMakeFiles/generate_pyx_decision_stump.dir/__/__/bindings/python/print_pyx.cpp.o
[ 16%] Linking CXX executable ../../../../bin/generate_pyx_decision_stump
[ 16%] Built target generate_pyx_decision_stump
Scanning dependencies of target build_pyx_decision_stump
[ 16%] Building Cython binding decision_stump.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/decision_stump.pyx
to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/decision_stump.cpp
building 'mlpack.decision_stump' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/decision_stump.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/decision_stump.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/decision_stump.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/decision_stump.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/decision_stump.so
[ 16%] Built target build_pyx_decision_stump
[ 16%] Generating ../../bindings/python/generate_pyx_decision_tree.cpp
Scanning dependencies of target generate_pyx_decision_tree
[ 17%] Building CXX object
src/mlpack/methods/decision_tree/CMakeFiles/generate_pyx_decision_tree.dir/__/__/bindings/python/generate_pyx_decision_tree.cpp.o
[ 17%] Building CXX object
src/mlpack/methods/decision_tree/CMakeFiles/generate_pyx_decision_tree.dir/__/__/bindings/python/print_pyx.cpp.o
[ 17%] Linking CXX executable ../../../../bin/generate_pyx_decision_tree
[ 17%] Built target generate_pyx_decision_tree
Scanning dependencies of target build_pyx_decision_tree
[ 18%] Building Cython binding decision_tree.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/decision_tree.pyx
to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/decision_tree.cpp
building 'mlpack.decision_tree' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/decision_tree.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/decision_tree.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/decision_tree.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/decision_tree.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/decision_tree.so
[ 18%] Built target build_pyx_decision_tree
[ 18%] Generating ../../bindings/python/generate_pyx_det.cpp
Scanning dependencies of target generate_pyx_det
[ 18%] Building CXX object
src/mlpack/methods/det/CMakeFiles/generate_pyx_det.dir/__/__/bindings/python/generate_pyx_det.cpp.o
[ 18%] Building CXX object
src/mlpack/methods/det/CMakeFiles/generate_pyx_det.dir/__/__/bindings/python/print_pyx.cpp.o
[ 19%] Linking CXX executable ../../../../bin/generate_pyx_det
[ 19%] Built target generate_pyx_det
Scanning dependencies of target build_pyx_det
[ 19%] Building Cython binding det.so...
no PYTHONPATH in os.environ
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/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/det.cpp
building 'mlpack.det' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/det.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/det.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/det.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/det.o
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-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/det.so
[ 19%] Built target build_pyx_det
[ 19%] Generating ../../bindings/python/generate_pyx_emst.cpp
Scanning dependencies of target generate_pyx_emst
[ 19%] Building CXX object
src/mlpack/methods/emst/CMakeFiles/generate_pyx_emst.dir/__/__/bindings/python/generate_pyx_emst.cpp.o
[ 19%] Building CXX object
src/mlpack/methods/emst/CMakeFiles/generate_pyx_emst.dir/__/__/bindings/python/print_pyx.cpp.o
[ 19%] Linking CXX executable ../../../../bin/generate_pyx_emst
[ 19%] Built target generate_pyx_emst
Scanning dependencies of target build_pyx_emst
[ 19%] Building Cython binding emst.so...
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/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/emst.cpp
building 'mlpack.emst' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/emst.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/emst.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/emst.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/emst.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/emst.so
[ 19%] Built target build_pyx_emst

[ 20%] Generating ../../bindings/python/generate_pyx_fastmks.cpp
Scanning dependencies of target generate_pyx_fastmks
[ 20%] Building CXX object
src/mlpack/methods/fastmks/CMakeFiles/generate_pyx_fastmks.dir/__/__/bindings/python/generate_pyx_fastmks.cpp.o
[ 20%] Building CXX object
src/mlpack/methods/fastmks/CMakeFiles/generate_pyx_fastmks.dir/__/__/bindings/python/print_pyx.cpp.o
[ 20%] Linking CXX executable ../../../../bin/generate_pyx_fastmks
[ 20%] Built target generate_pyx_fastmks
Scanning dependencies of target build_pyx_fastmks
[ 20%] Building Cython binding fastmks.so...
no PYTHONPATH in os.environ
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to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/fastmks.cpp
building 'mlpack.fastmks' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/fastmks.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/fastmks.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/fastmks.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/fastmks.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/fastmks.so
[ 20%] Built target build_pyx_fastmks
[ 20%] Generating ../generate_pyx_test_python_binding.cpp
Scanning dependencies of target generate_pyx_test_python_binding
[ 20%] Building CXX object
src/mlpack/bindings/python/tests/CMakeFiles/generate_pyx_test_python_binding.dir/__/generate_pyx_test_python_binding.cpp.o
[ 20%] Building CXX object
src/mlpack/bindings/python/tests/CMakeFiles/generate_pyx_test_python_binding.dir/__/print_pyx.cpp.o
[ 21%] Linking CXX executable
../../../../../bin/generate_pyx_test_python_binding
[ 21%] Built target generate_pyx_test_python_binding
Scanning dependencies of target build_pyx_test_python_binding
[ 21%] Building Cython binding test_python_binding.so...
no PYTHONPATH in os.environ
running build_ext
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to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/test_python_binding.cpp
building 'mlpack.test_python_binding' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/test_python_binding.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/test_python_binding.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/test_python_binding.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/test_python_binding.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/test_python_binding.so
[ 21%] Built target build_pyx_test_python_binding
[ 21%] Generating ../../bindings/python/generate_pyx_approx_kfn.cpp
Scanning dependencies of target generate_pyx_approx_kfn
[ 22%] Building CXX object
src/mlpack/methods/approx_kfn/CMakeFiles/generate_pyx_approx_kfn.dir/__/__/bindings/python/generate_pyx_approx_kfn.cpp.o
[ 22%] Building CXX object
src/mlpack/methods/approx_kfn/CMakeFiles/generate_pyx_approx_kfn.dir/__/__/bindings/python/print_pyx.cpp.o
[ 22%] Linking CXX executable ../../../../bin/generate_pyx_approx_kfn
[ 22%] Built target generate_pyx_approx_kfn
Scanning dependencies of target build_pyx_approx_kfn
[ 22%] Building Cython binding approx_kfn.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
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to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/approx_kfn.cpp
building 'mlpack.approx_kfn' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/approx_kfn.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/approx_kfn.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/approx_kfn.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/approx_kfn.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/approx_kfn.so
[ 22%] Built target build_pyx_approx_kfn
[ 22%] Generating ../../bindings/python/generate_pyx_cf.cpp
Scanning dependencies of target generate_pyx_cf
[ 22%] Building CXX object
src/mlpack/methods/cf/CMakeFiles/generate_pyx_cf.dir/__/__/bindings/python/generate_pyx_cf.cpp.o
[ 23%] Building CXX object
src/mlpack/methods/cf/CMakeFiles/generate_pyx_cf.dir/__/__/bindings/python/print_pyx.cpp.o
[ 23%] Linking CXX executable ../../../../bin/generate_pyx_cf
[ 23%] Built target generate_pyx_cf
Scanning dependencies of target build_pyx_cf
[ 23%] Building Cython binding cf.so...
no PYTHONPATH in os.environ
running build_ext
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to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/cf.cpp
building 'mlpack.cf' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/cf.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/cf.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/cf.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/cf.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/cf.so
[ 23%] Built target build_pyx_cf
[ 23%] Generating ../../bindings/python/generate_pyx_dbscan.cpp
Scanning dependencies of target generate_pyx_dbscan
[ 23%] Building CXX object
src/mlpack/methods/dbscan/CMakeFiles/generate_pyx_dbscan.dir/__/__/bindings/python/generate_pyx_dbscan.cpp.o
[ 23%] Building CXX object
src/mlpack/methods/dbscan/CMakeFiles/generate_pyx_dbscan.dir/__/__/bindings/python/print_pyx.cpp.o
[ 23%] Linking CXX executable ../../../../bin/generate_pyx_dbscan
[ 23%] Built target generate_pyx_dbscan
Scanning dependencies of target build_pyx_dbscan
[ 23%] Building Cython binding dbscan.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/dbscan.pyx
to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/dbscan.cpp
building 'mlpack.dbscan' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/dbscan.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/dbscan.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/dbscan.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/dbscan.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/dbscan.so
[ 23%] Built target build_pyx_dbscan
[ 23%] Generating ../../bindings/python/generate_pyx_gmm_probability.cpp
Scanning dependencies of target generate_pyx_gmm_probability
[ 23%] Building CXX object
src/mlpack/methods/gmm/CMakeFiles/generate_pyx_gmm_probability.dir/__/__/bindings/python/generate_pyx_gmm_probability.cpp.o
[ 23%] Building CXX object
src/mlpack/methods/gmm/CMakeFiles/generate_pyx_gmm_probability.dir/__/__/bindings/python/print_pyx.cpp.o
[ 25%] Linking CXX executable ../../../../bin/generate_pyx_gmm_probability
[ 25%] Built target generate_pyx_gmm_probability
Scanning dependencies of target build_pyx_gmm_probability
[ 26%] Building Cython binding gmm_probability.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/gmm_probability.pyx
to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/gmm_probability.cpp
building 'mlpack.gmm_probability' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/gmm_probability.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/gmm_probability.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/gmm_probability.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/gmm_probability.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/gmm_probability.so
[ 26%] Built target build_pyx_gmm_probability
[ 26%] Generating ../../bindings/python/generate_pyx_gmm_generate.cpp
Scanning dependencies of target generate_pyx_gmm_generate
[ 26%] Building CXX object
src/mlpack/methods/gmm/CMakeFiles/generate_pyx_gmm_generate.dir/__/__/bindings/python/generate_pyx_gmm_generate.cpp.o
[ 27%] Building CXX object
src/mlpack/methods/gmm/CMakeFiles/generate_pyx_gmm_generate.dir/__/__/bindings/python/print_pyx.cpp.o
[ 27%] Linking CXX executable ../../../../bin/generate_pyx_gmm_generate
[ 27%] Built target generate_pyx_gmm_generate
Scanning dependencies of target build_pyx_gmm_generate
[ 27%] Building Cython binding gmm_generate.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/gmm_generate.pyx
to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/gmm_generate.cpp
building 'mlpack.gmm_generate' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/gmm_generate.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/gmm_generate.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/gmm_generate.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/gmm_generate.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/gmm_generate.so
[ 27%] Built target build_pyx_gmm_generate
[ 27%] Generating ../../bindings/python/generate_pyx_gmm_train.cpp
Scanning dependencies of target generate_pyx_gmm_train
[ 27%] Building CXX object
src/mlpack/methods/gmm/CMakeFiles/generate_pyx_gmm_train.dir/__/__/bindings/python/generate_pyx_gmm_train.cpp.o
[ 27%] Building CXX object
src/mlpack/methods/gmm/CMakeFiles/generate_pyx_gmm_train.dir/__/__/bindings/python/print_pyx.cpp.o
[ 27%] Linking CXX executable ../../../../bin/generate_pyx_gmm_train
[ 27%] Built target generate_pyx_gmm_train
Scanning dependencies of target build_pyx_gmm_train
[ 27%] Building Cython binding gmm_train.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/gmm_train.pyx
to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/gmm_train.cpp
building 'mlpack.gmm_train' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/gmm_train.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/gmm_train.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/gmm_train.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/gmm_train.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/gmm_train.so
[ 27%] Built target build_pyx_gmm_train
[ 27%] Generating ../../bindings/python/generate_pyx_hmm_viterbi.cpp
Scanning dependencies of target generate_pyx_hmm_viterbi
[ 27%] Building CXX object
src/mlpack/methods/hmm/CMakeFiles/generate_pyx_hmm_viterbi.dir/__/__/bindings/python/generate_pyx_hmm_viterbi.cpp.o
[ 27%] Building CXX object
src/mlpack/methods/hmm/CMakeFiles/generate_pyx_hmm_viterbi.dir/__/__/bindings/python/print_pyx.cpp.o
[ 27%] Linking CXX executable ../../../../bin/generate_pyx_hmm_viterbi
[ 27%] Built target generate_pyx_hmm_viterbi
Scanning dependencies of target build_pyx_hmm_viterbi
[ 27%] Building Cython binding hmm_viterbi.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hmm_viterbi.pyx
to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hmm_viterbi.cpp
building 'mlpack.hmm_viterbi' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hmm_viterbi.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hmm_viterbi.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hmm_viterbi.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hmm_viterbi.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/hmm_viterbi.so
[ 27%] Built target build_pyx_hmm_viterbi
[ 27%] Generating ../../bindings/python/generate_pyx_hmm_loglik.cpp
Scanning dependencies of target generate_pyx_hmm_loglik
[ 27%] Building CXX object
src/mlpack/methods/hmm/CMakeFiles/generate_pyx_hmm_loglik.dir/__/__/bindings/python/generate_pyx_hmm_loglik.cpp.o
[ 28%] Building CXX object
src/mlpack/methods/hmm/CMakeFiles/generate_pyx_hmm_loglik.dir/__/__/bindings/python/print_pyx.cpp.o
[ 28%] Linking CXX executable ../../../../bin/generate_pyx_hmm_loglik
[ 28%] Built target generate_pyx_hmm_loglik
Scanning dependencies of target build_pyx_hmm_loglik
[ 28%] Building Cython binding hmm_loglik.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hmm_loglik.pyx
to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hmm_loglik.cpp
building 'mlpack.hmm_loglik' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hmm_loglik.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hmm_loglik.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hmm_loglik.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hmm_loglik.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/hmm_loglik.so
[ 28%] Built target build_pyx_hmm_loglik
[ 28%] Generating ../../bindings/python/generate_pyx_hmm_train.cpp
Scanning dependencies of target generate_pyx_hmm_train
[ 28%] Building CXX object
src/mlpack/methods/hmm/CMakeFiles/generate_pyx_hmm_train.dir/__/__/bindings/python/generate_pyx_hmm_train.cpp.o
[ 28%] Building CXX object
src/mlpack/methods/hmm/CMakeFiles/generate_pyx_hmm_train.dir/__/__/bindings/python/print_pyx.cpp.o
[ 29%] Linking CXX executable ../../../../bin/generate_pyx_hmm_train
[ 29%] Built target generate_pyx_hmm_train
Scanning dependencies of target build_pyx_hmm_train
[ 29%] Building Cython binding hmm_train.so...
no PYTHONPATH in os.environ
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building 'mlpack.hmm_train' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
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-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hmm_train.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hmm_train.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hmm_train.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
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In file included from
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/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hmm_train.o
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-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
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build/lib.macosx-10.12-x86_64-2.7/mlpack/hmm_train.so
[ 29%] Built target build_pyx_hmm_train

[ 30%] Generating ../../bindings/python/generate_pyx_hmm_generate.cpp
Scanning dependencies of target generate_pyx_hmm_generate
[ 30%] Building CXX object
src/mlpack/methods/hmm/CMakeFiles/generate_pyx_hmm_generate.dir/__/__/bindings/python/generate_pyx_hmm_generate.cpp.o
[ 30%] Building CXX object
src/mlpack/methods/hmm/CMakeFiles/generate_pyx_hmm_generate.dir/__/__/bindings/python/print_pyx.cpp.o
[ 30%] Linking CXX executable ../../../../bin/generate_pyx_hmm_generate
[ 30%] Built target generate_pyx_hmm_generate
Scanning dependencies of target build_pyx_hmm_generate
[ 30%] Building Cython binding hmm_generate.so...
no PYTHONPATH in os.environ
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building 'mlpack.hmm_generate' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hmm_generate.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hmm_generate.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hmm_generate.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hmm_generate.o
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build/lib.macosx-10.12-x86_64-2.7/mlpack/hmm_generate.so
[ 30%] Built target build_pyx_hmm_generate
[ 30%] Generating ../../bindings/python/generate_pyx_hoeffding_tree.cpp
Scanning dependencies of target generate_pyx_hoeffding_tree
[ 31%] Building CXX object
src/mlpack/methods/hoeffding_trees/CMakeFiles/generate_pyx_hoeffding_tree.dir/__/__/bindings/python/generate_pyx_hoeffding_tree.cpp.o
[ 31%] Building CXX object
src/mlpack/methods/hoeffding_trees/CMakeFiles/generate_pyx_hoeffding_tree.dir/__/__/bindings/python/print_pyx.cpp.o
[ 31%] Linking CXX executable ../../../../bin/generate_pyx_hoeffding_tree
[ 31%] Built target generate_pyx_hoeffding_tree
Scanning dependencies of target build_pyx_hoeffding_tree
[ 32%] Building Cython binding hoeffding_tree.so...
no PYTHONPATH in os.environ
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building 'mlpack.hoeffding_tree' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hoeffding_tree.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hoeffding_tree.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hoeffding_tree.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/hoeffding_tree.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/hoeffding_tree.so
[ 32%] Built target build_pyx_hoeffding_tree
[ 32%] Generating ../../bindings/python/generate_pyx_adaboost.cpp
Scanning dependencies of target generate_pyx_adaboost
[ 32%] Building CXX object
src/mlpack/methods/adaboost/CMakeFiles/generate_pyx_adaboost.dir/__/__/bindings/python/generate_pyx_adaboost.cpp.o
[ 32%] Building CXX object
src/mlpack/methods/adaboost/CMakeFiles/generate_pyx_adaboost.dir/__/__/bindings/python/print_pyx.cpp.o
[ 32%] Linking CXX executable ../../../../bin/generate_pyx_adaboost
[ 32%] Built target generate_pyx_adaboost
Scanning dependencies of target build_pyx_adaboost
[ 32%] Building Cython binding adaboost.so...
no PYTHONPATH in os.environ
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/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/adaboost.cpp
building 'mlpack.adaboost' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/adaboost.cpp
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build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/adaboost.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/adaboost.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/adaboost.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/adaboost.so
[ 32%] Built target build_pyx_adaboost
[ 32%] Generating ../../bindings/python/generate_pyx_kernel_pca.cpp
Scanning dependencies of target generate_pyx_kernel_pca
[ 32%] Building CXX object
src/mlpack/methods/kernel_pca/CMakeFiles/generate_pyx_kernel_pca.dir/__/__/bindings/python/generate_pyx_kernel_pca.cpp.o
[ 33%] Building CXX object
src/mlpack/methods/kernel_pca/CMakeFiles/generate_pyx_kernel_pca.dir/__/__/bindings/python/print_pyx.cpp.o
[ 33%] Linking CXX executable ../../../../bin/generate_pyx_kernel_pca
[ 33%] Built target generate_pyx_kernel_pca
Scanning dependencies of target build_pyx_kernel_pca
[ 33%] Building Cython binding kernel_pca.so...
no PYTHONPATH in os.environ
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building 'mlpack.kernel_pca' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
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-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/kernel_pca.cpp
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build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/kernel_pca.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/kernel_pca.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/kernel_pca.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/kernel_pca.so
[ 33%] Built target build_pyx_kernel_pca
[ 34%] Generating ../../bindings/python/generate_pyx_kmeans.cpp
Scanning dependencies of target generate_pyx_kmeans
[ 34%] Building CXX object
src/mlpack/methods/kmeans/CMakeFiles/generate_pyx_kmeans.dir/__/__/bindings/python/generate_pyx_kmeans.cpp.o
[ 34%] Building CXX object
src/mlpack/methods/kmeans/CMakeFiles/generate_pyx_kmeans.dir/__/__/bindings/python/print_pyx.cpp.o
[ 34%] Linking CXX executable ../../../../bin/generate_pyx_kmeans
[ 34%] Built target generate_pyx_kmeans
Scanning dependencies of target build_pyx_kmeans
[ 34%] Building Cython binding kmeans.so...
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/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/kmeans.cpp
building 'mlpack.kmeans' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
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-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/kmeans.cpp
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build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/kmeans.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/kmeans.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/kmeans.o
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-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/kmeans.so
[ 34%] Built target build_pyx_kmeans
[ 34%] Generating ../../bindings/python/generate_pyx_lars.cpp
Scanning dependencies of target generate_pyx_lars
[ 34%] Building CXX object
src/mlpack/methods/lars/CMakeFiles/generate_pyx_lars.dir/__/__/bindings/python/generate_pyx_lars.cpp.o
[ 34%] Building CXX object
src/mlpack/methods/lars/CMakeFiles/generate_pyx_lars.dir/__/__/bindings/python/print_pyx.cpp.o
XX object
src/mlpack/methods/lars/CMakeFiles/generate_pyx_lars.dir/__/__/bindings/python/print_pyx.cpp.o
[ 34%] Linking CXX executable ../../../../bin/generate_pyx_lars
[ 34%] Built target generate_pyx_lars
Scanning dependencies of target build_pyx_lars
[ 34%] Building Cython binding lars.so...
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/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/lars.cpp
building 'mlpack.lars' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
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-I/usr/local/include -I/usr/local/opt/openssl/include
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-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/lars.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/lars.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/lars.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/lars.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/lars.so
[ 34%] Built target build_pyx_lars
[ 35%] Generating ../../bindings/python/generate_pyx_linear_regression.cpp
Scanning dependencies of target generate_pyx_linear_regression
[ 35%] Building CXX object
src/mlpack/methods/linear_regression/CMakeFiles/generate_pyx_linear_regression.dir/__/__/bindings/python/generate_pyx_linear_regression.cpp.o
[ 35%] Building CXX object
src/mlpack/methods/linear_regression/CMakeFiles/generate_pyx_linear_regression.dir/__/__/bindings/python/print_pyx.cpp.o
[ 35%] Linking CXX executable ../../../../bin/generate_pyx_linear_regression
[ 35%] Built target generate_pyx_linear_regression
Scanning dependencies of target build_pyx_linear_regression
[ 35%] Building Cython binding linear_regression.so...
no PYTHONPATH in os.environ
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cythoning
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to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/linear_regression.cpp
building 'mlpack.linear_regression' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/linear_regression.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/linear_regression.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/linear_regression.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/linear_regression.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/linear_regression.so
[ 35%] Built target build_pyx_linear_regression
[ 35%] Generating
../../bindings/python/generate_pyx_local_coordinate_coding.cpp
Scanning dependencies of target generate_pyx_local_coordinate_coding
[ 35%] Building CXX object
src/mlpack/methods/local_coordinate_coding/CMakeFiles/generate_pyx_local_coordinate_coding.dir/__/__/bindings/python/generate_pyx_local_coordinate_coding.cpp.o
[ 36%] Building CXX object
src/mlpack/methods/local_coordinate_coding/CMakeFiles/generate_pyx_local_coordinate_coding.dir/__/__/bindings/python/print_pyx.cpp.o
[ 36%] Linking CXX executable
../../../../bin/generate_pyx_local_coordinate_coding
[ 36%] Built target generate_pyx_local_coordinate_coding
Scanning dependencies of target build_pyx_local_coordinate_coding
[ 36%] Building Cython binding local_coordinate_coding.so...
no PYTHONPATH in os.environ
running build_ext
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building 'mlpack.local_coordinate_coding' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/local_coordinate_coding.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/local_coordinate_coding.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/local_coordinate_coding.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/local_coordinate_coding.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/local_coordinate_coding.so
[ 36%] Built target build_pyx_local_coordinate_coding
[ 36%] Generating ../../bindings/python/generate_pyx_logistic_regression.cpp
Scanning dependencies of target generate_pyx_logistic_regression
[ 36%] Building CXX object
src/mlpack/methods/logistic_regression/CMakeFiles/generate_pyx_logistic_regression.dir/__/__/bindings/python/generate_pyx_logistic_regression.cpp.o
[ 36%] Building CXX object
src/mlpack/methods/logistic_regression/CMakeFiles/generate_pyx_logistic_regression.dir/__/__/bindings/python/print_pyx.cpp.o
ogistic_regression/CMakeFiles/generate_pyx_logistic_regression.dir/__/__/bindings/python/print_pyx.cpp.o
[ 37%] Linking CXX executable
../../../../bin/generate_pyx_logistic_regression
[ 37%] Built target generate_pyx_logistic_regression
Scanning dependencies of target build_pyx_logistic_regression
[ 37%] Building Cython binding logistic_regression.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/logistic_regression.pyx
to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/logistic_regression.cpp
building 'mlpack.logistic_regression' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/logistic_regression.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/logistic_regression.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/logistic_regression.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/logistic_regression.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/logistic_regression.so
[ 37%] Built target build_pyx_logistic_regression
[ 37%] Generating ../../bindings/python/generate_pyx_lsh.cpp
Scanning dependencies of target generate_pyx_lsh
[ 37%] Building CXX object
src/mlpack/methods/lsh/CMakeFiles/generate_pyx_lsh.dir/__/__/bindings/python/generate_pyx_lsh.cpp.o
[ 37%] Building CXX object
src/mlpack/methods/lsh/CMakeFiles/generate_pyx_lsh.dir/__/__/bindings/python/print_pyx.cpp.o
[ 37%] Linking CXX executable ../../../../bin/generate_pyx_lsh
[ 37%] Built target generate_pyx_lsh
Scanning dependencies of target build_pyx_lsh
[ 37%] Building Cython binding lsh.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
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to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/lsh.cpp
building 'mlpack.lsh' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/lsh.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/lsh.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/lsh.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/lsh.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/lsh.so
[ 37%] Built target build_pyx_lsh
[ 37%] Generating ../../bindings/python/generate_pyx_mean_shift.cpp
Scanning dependencies of target generate_pyx_mean_shift
[ 38%] Building CXX object
src/mlpack/methods/mean_shift/CMakeFiles/generate_pyx_mean_shift.dir/__/__/bindings/python/generate_pyx_mean_shift.cpp.o
[ 38%] Building CXX object
src/mlpack/methods/mean_shift/CMakeFiles/generate_pyx_mean_shift.dir/__/__/bindings/python/print_pyx.cpp.o
[ 38%] Linking CXX executable ../../../../bin/generate_pyx_mean_shift
[ 38%] Built target generate_pyx_mean_shift
Scanning dependencies of target build_pyx_mean_shift
[ 39%] Building Cython binding mean_shift.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/mean_shift.pyx
to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/mean_shift.cpp
building 'mlpack.mean_shift' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/mean_shift.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/mean_shift.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/mean_shift.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/mean_shift.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/mean_shift.so
[ 39%] Built target build_pyx_mean_shift
[ 39%] Generating ../../bindings/python/generate_pyx_nbc.cpp
Scanning dependencies of target generate_pyx_nbc
[ 39%] Building CXX object
src/mlpack/methods/naive_bayes/CMakeFiles/generate_pyx_nbc.dir/__/__/bindings/python/generate_pyx_nbc.cpp.o
c.cpp.o
[ 40%] Building CXX object
src/mlpack/methods/naive_bayes/CMakeFiles/generate_pyx_nbc.dir/__/__/bindings/python/print_pyx.cpp.o
[ 40%] Linking CXX executable ../../../../bin/generate_pyx_nbc
[ 40%] Built target generate_pyx_nbc
Scanning dependencies of target build_pyx_nbc
[ 40%] Building Cython binding nbc.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
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to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/nbc.cpp
building 'mlpack.nbc' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/nbc.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/nbc.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/nbc.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/nbc.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/nbc.so
[ 40%] Built target build_pyx_nbc
[ 40%] Generating ../../bindings/python/generate_pyx_nca.cpp
Scanning dependencies of target generate_pyx_nca
[ 40%] Building CXX object
src/mlpack/methods/nca/CMakeFiles/generate_pyx_nca.dir/__/__/bindings/python/generate_pyx_nca.cpp.o
[ 40%] Building CXX object
src/mlpack/methods/nca/CMakeFiles/generate_pyx_nca.dir/__/__/bindings/python/print_pyx.cpp.o
[ 40%] Linking CXX executable ../../../../bin/generate_pyx_nca
[ 40%] Built target generate_pyx_nca
Scanning dependencies of target build_pyx_nca
[ 40%] Building Cython binding nca.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/nca.pyx
to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/nca.cpp
building 'mlpack.nca' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/nca.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/nca.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/nca.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/nca.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/nca.so
[ 40%] Built target build_pyx_nca
[ 40%] Generating ../../bindings/python/generate_pyx_kfn.cpp
Scanning dependencies of target generate_pyx_kfn
[ 40%] Building CXX object
src/mlpack/methods/neighbor_search/CMakeFiles/generate_pyx_kfn.dir/__/__/bindings/python/generate_pyx_kfn.cpp.o
[ 40%] Building CXX object
src/mlpack/methods/neighbor_search/CMakeFiles/generate_pyx_kfn.dir/__/__/bindings/python/print_pyx.cpp.o
[ 40%] Linking CXX executable ../../../../bin/generate_pyx_kfn
[ 40%] Built target generate_pyx_kfn
Scanning dependencies of target build_pyx_kfn
[ 40%] Building Cython binding kfn.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/kfn.pyx
to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/kfn.cpp
building 'mlpack.kfn' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/kfn.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/kfn.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/kfn.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/kfn.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/kfn.so
[ 40%] Built target build_pyx_kfn
[ 40%] Generating ../../bindings/python/generate_pyx_knn.cpp
Scanning dependencies of target generate_pyx_knn

[ 41%] Building CXX object
src/mlpack/methods/neighbor_search/CMakeFiles/generate_pyx_knn.dir/__/__/bindings/python/generate_pyx_knn.cpp.o
[ 41%] Building CXX object
src/mlpack/methods/neighbor_search/CMakeFiles/generate_pyx_knn.dir/__/__/bindings/python/print_pyx.cpp.o
[ 41%] Linking CXX executable ../../../../bin/generate_pyx_knn
[ 41%] Built target generate_pyx_knn
Scanning dependencies of target build_pyx_knn
[ 41%] Building Cython binding knn.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/knn.pyx
to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/knn.cpp
building 'mlpack.knn' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/knn.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/knn.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/knn.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/knn.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/knn.so
[ 41%] Built target build_pyx_knn
[ 42%] Generating ../../bindings/python/generate_pyx_nmf.cpp
Scanning dependencies of target generate_pyx_nmf
[ 42%] Building CXX object
src/mlpack/methods/nmf/CMakeFiles/generate_pyx_nmf.dir/__/__/bindings/python/generate_pyx_nmf.cpp.o
[ 42%] Building CXX object
src/mlpack/methods/nmf/CMakeFiles/generate_pyx_nmf.dir/__/__/bindings/python/print_pyx.cpp.o
[ 42%] Linking CXX executable ../../../../bin/generate_pyx_nmf
[ 42%] Built target generate_pyx_nmf
Scanning dependencies of target build_pyx_nmf
[ 42%] Building Cython binding nmf.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/nmf.pyx
to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/nmf.cpp
building 'mlpack.nmf' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/nmf.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/nmf.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/nmf.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/nmf.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/nmf.so
[ 42%] Built target build_pyx_nmf
[ 42%] Generating ../../bindings/python/generate_pyx_pca.cpp
Scanning dependencies of target generate_pyx_pca
[ 43%] Building CXX object
src/mlpack/methods/pca/CMakeFiles/generate_pyx_pca.dir/__/__/bindings/python/generate_pyx_pca.cpp.o
[ 43%] Building CXX object
src/mlpack/methods/pca/CMakeFiles/generate_pyx_pca.dir/__/__/bindings/python/print_pyx.cpp.o
[ 43%] Linking CXX executable ../../../../bin/generate_pyx_pca
[ 43%] Built target generate_pyx_pca
Scanning dependencies of target build_pyx_pca
[ 43%] Building Cython binding pca.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/pca.pyx
to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/pca.cpp
building 'mlpack.pca' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/pca.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/pca.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/pca.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/pca.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/pca.so
[ 43%] Built target build_pyx_pca
[ 43%] Generating ../../bindings/python/generate_pyx_perceptron.cpp
Scanning dependencies of target generate_pyx_perceptron
[ 43%] Building CXX object
src/mlpack/methods/perceptron/CMakeFiles/generate_pyx_perceptron.dir/__/__/bindings/python/generate_pyx_perceptron.cpp.o
[ 43%] Building CXX object
src/mlpack/methods/perceptron/CMakeFiles/generate_pyx_perceptron.dir/__/__/bindings/python/print_pyx.cpp.o
[ 44%] Linking CXX executable ../../../../bin/generate_pyx_perceptron
[ 44%] Built target generate_pyx_perceptron
Scanning dependencies of target build_pyx_perceptron
[ 45%] Building Cython binding perceptron.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/perceptron.pyx
to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/perceptron.cpp
building 'mlpack.perceptron' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/perceptron.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/perceptron.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/perceptron.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/perceptron.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/perceptron.so
[ 45%] Built target build_pyx_perceptron
[ 45%] Generating ../../bindings/python/generate_pyx_preprocess_binarize.cpp
Scanning dependencies of target generate_pyx_preprocess_binarize
[ 45%] Building CXX object
src/mlpack/methods/preprocess/CMakeFiles/generate_pyx_preprocess_binarize.dir/__/__/bindings/python/generate_pyx_preprocess_binarize.cpp.o
[ 45%] Building CXX object
src/mlpack/methods/preprocess/CMakeFiles/generate_pyx_preprocess_binarize.dir/__/__/bindings/python/print_pyx.cpp.o
[ 45%] Linking CXX executable
../../../../bin/generate_pyx_preprocess_binarize
[ 45%] Built target generate_pyx_preprocess_binarize
Scanning dependencies of target build_pyx_preprocess_binarize
[ 45%] Building Cython binding preprocess_binarize.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/preprocess_binarize.pyx
to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/preprocess_binarize.cpp
building 'mlpack.preprocess_binarize' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/preprocess_binarize.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/preprocess_binarize.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/preprocess_binarize.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/preprocess_binarize.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/preprocess_binarize.so
[ 45%] Built target build_pyx_preprocess_binarize
[ 46%] Generating ../../bindings/python/generate_pyx_preprocess_describe.cpp
Scanning dependencies of target generate_pyx_preprocess_describe
[ 46%] Building CXX object
src/mlpack/methods/preprocess/CMakeFiles/generate_pyx_preprocess_describe.dir/__/__/bindings/python/generate_pyx_preprocess_describe.cpp.o
[ 46%] Building CXX object
src/mlpack/methods/preprocess/CMakeFiles/generate_pyx_preprocess_describe.dir/__/__/bindings/python/print_pyx.cpp.o
[ 46%] Linking CXX executable
../../../../bin/generate_pyx_preprocess_describe
[ 46%] Built target generate_pyx_preprocess_describe
Scanning dependencies of target build_pyx_preprocess_describe
[ 46%] Building Cython binding preprocess_describe.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
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to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/preprocess_describe.cpp
building 'mlpack.preprocess_describe' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/preprocess_describe.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/preprocess_describe.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/preprocess_describe.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/preprocess_describe.o
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-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/preprocess_describe.so
[ 46%] Built target build_pyx_preprocess_describe
[ 46%] Generating ../../bindings/python/generate_pyx_preprocess_split.cpp
Scanning dependencies of target generate_pyx_preprocess_split
[ 47%] Building CXX object
src/mlpack/methods/preprocess/CMakeFiles/generate_pyx_preprocess_split.dir/__/__/bindings/python/generate_pyx_preprocess_split.cpp.o
[ 47%] Building CXX object
src/mlpack/methods/preprocess/CMakeFiles/generate_pyx_preprocess_split.dir/__/__/bindings/python/print_pyx.cpp.o
[ 47%] Linking CXX executable ../../../../bin/generate_pyx_preprocess_split
[ 47%] Built target generate_pyx_preprocess_split
Scanning dependencies of target build_pyx_preprocess_split
[ 47%] Building Cython binding preprocess_split.so...
no PYTHONPATH in os.environ
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cythoning
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to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/preprocess_split.cpp
building 'mlpack.preprocess_split' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/preprocess_split.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/preprocess_split.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/preprocess_split.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/preprocess_split.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/preprocess_split.so
[ 47%] Built target build_pyx_preprocess_split
[ 47%] Generating ../../bindings/python/generate_pyx_radical.cpp
Scanning dependencies of target generate_pyx_radical
[ 47%] Building CXX object
src/mlpack/methods/radical/CMakeFiles/generate_pyx_radical.dir/__/__/bindings/python/generate_pyx_radical.cpp.o
[ 47%] Building CXX object
src/mlpack/methods/radical/CMakeFiles/generate_pyx_radical.dir/__/__/bindings/python/print_pyx.cpp.o
[ 48%] Linking CXX executable ../../../../bin/generate_pyx_radical
[ 48%] Built target generate_pyx_radical
Scanning dependencies of target build_pyx_radical
[ 48%] Building Cython binding radical.so...
no PYTHONPATH in os.environ
running build_ext
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to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/radical.cpp
building 'mlpack.radical' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/radical.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/radical.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/radical.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/radical.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/radical.so
[ 48%] Built target build_pyx_radical
[ 48%] Generating ../../bindings/python/generate_pyx_random_forest.cpp
Scanning dependencies of target generate_pyx_random_forest
[ 48%] Building CXX object
src/mlpack/methods/random_forest/CMakeFiles/generate_pyx_random_forest.dir/__/__/bindings/python/generate_pyx_random_forest.cpp.o
[ 48%] Building CXX object
src/mlpack/methods/random_forest/CMakeFiles/generate_pyx_random_forest.dir/__/__/bindings/python/print_pyx.cpp.o
[ 48%] Linking CXX executable ../../../../bin/generate_pyx_random_forest
[ 48%] Built target generate_pyx_random_forest
Scanning dependencies of target build_pyx_random_forest
[ 48%] Building Cython binding random_forest.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
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to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/random_forest.cpp
building 'mlpack.random_forest' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/random_forest.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/random_forest.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/random_forest.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/random_forest.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/random_forest.so
[ 48%] Built target build_pyx_random_forest
[ 48%] Generating ../../bindings/python/generate_pyx_krann.cpp
Scanning dependencies of target generate_pyx_krann
[ 48%] Building CXX object
src/mlpack/methods/rann/CMakeFiles/generate_pyx_krann.dir/__/__/bindings/python/generate_pyx_krann.cpp.o
[ 48%] Building CXX object
src/mlpack/methods/rann/CMakeFiles/generate_pyx_krann.dir/__/__/bindings/python/print_pyx.cpp.o
[ 50%] Linking CXX executable ../../../../bin/generate_pyx_krann
[ 50%] Built target generate_pyx_krann
Scanning dependencies of target build_pyx_krann
[ 51%] Building Cython binding krann.so...
no PYTHONPATH in os.environ
running build_ext
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to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/krann.cpp
building 'mlpack.krann' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/krann.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/krann.o
-DBINDING_TYPE=BINDING_TYPE_PYX -std=c++11 -O3 -Wno-unknown-pragmas
In file included from
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/krann.cpp:582:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
warning: "Using deprecated NumPy API, disable it by "
      "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
clang++ -bundle -undefined dynamic_lookup
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/krann.o
-L/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/lib/
-L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib
-lc++ -lmlpack -lboost_serialization -o
build/lib.macosx-10.12-x86_64-2.7/mlpack/krann.so
[ 51%] Built target build_pyx_krann
[ 52%] Generating ../../bindings/python/generate_pyx_softmax_regression.cpp
Scanning dependencies of target generate_pyx_softmax_regression
[ 52%] Building CXX object
src/mlpack/methods/softmax_regression/CMakeFiles/generate_pyx_softmax_regression.dir/__/__/bindings/python/generate_pyx_softmax_regression.cpp.o
[ 52%] Building CXX object
src/mlpack/methods/softmax_regression/CMakeFiles/generate_pyx_softmax_regression.dir/__/__/bindings/python/print_pyx.cpp.o
[ 52%] Linking CXX executable
../../../../bin/generate_pyx_softmax_regression
[ 52%] Built target generate_pyx_softmax_regression
Scanning dependencies of target build_pyx_softmax_regression
[ 53%] Building Cython binding softmax_regression.so...
no PYTHONPATH in os.environ
running build_ext
cythoning
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to
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/softmax_regression.cpp
building 'mlpack.softmax_regression' extension
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -Wstrict-prototypes
-I/usr/local/lib/python2.7/site-packages/numpy/core/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/src
-I/usr/local/include -I/usr/local/include
-I/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/..
-I/usr/local/include -I/usr/local/opt/openssl/include
-I/usr/local/opt/sqlite/include
-I/usr/local/Cellar/python at 2/2.7.15_1/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/softmax_regression.cpp
-o
build/temp.macosx-10.12-x86_64-2.7/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack/softmax_regression.o
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build/bdist.macosx-10.12-x86_64/egg/mlpack
copying build/lib.macosx-10.12-x86_64-2.7/mlpack/radical.so ->
build/bdist.macosx-10.12-x86_64/egg/mlpack
copying build/lib.macosx-10.12-x86_64-2.7/mlpack/random_forest.so ->
build/bdist.macosx-10.12-x86_64/egg/mlpack
copying build/lib.macosx-10.12-x86_64-2.7/mlpack/softmax_regression.so ->
build/bdist.macosx-10.12-x86_64/egg/mlpack
copying build/lib.macosx-10.12-x86_64-2.7/mlpack/sparse_coding.so ->
build/bdist.macosx-10.12-x86_64/egg/mlpack
copying build/lib.macosx-10.12-x86_64-2.7/mlpack/test_python_binding.so ->
build/bdist.macosx-10.12-x86_64/egg/mlpack
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/__init__.py to
__init__.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/matrix_utils.py
to matrix_utils.pyc
creating stub loader for mlpack/arma_numpy.so
creating stub loader for mlpack/test_python_binding.so
creating stub loader for mlpack/adaboost.so
creating stub loader for mlpack/approx_kfn.so
creating stub loader for mlpack/cf.so
creating stub loader for mlpack/dbscan.so
creating stub loader for mlpack/decision_stump.so
creating stub loader for mlpack/decision_tree.so
creating stub loader for mlpack/det.so
creating stub loader for mlpack/emst.so
creating stub loader for mlpack/fastmks.so
creating stub loader for mlpack/gmm_train.so
creating stub loader for mlpack/gmm_generate.so
creating stub loader for mlpack/gmm_probability.so
creating stub loader for mlpack/hmm_train.so
creating stub loader for mlpack/hmm_loglik.so
creating stub loader for mlpack/hmm_viterbi.so
creating stub loader for mlpack/hmm_generate.so
creating stub loader for mlpack/hoeffding_tree.so
creating stub loader for mlpack/kernel_pca.so
creating stub loader for mlpack/kmeans.so
creating stub loader for mlpack/lars.so
creating stub loader for mlpack/linear_regression.so
creating stub loader for mlpack/local_coordinate_coding.so
creating stub loader for mlpack/logistic_regression.so
creating stub loader for mlpack/lsh.so
creating stub loader for mlpack/mean_shift.so
creating stub loader for mlpack/nbc.so
creating stub loader for mlpack/nca.so
creating stub loader for mlpack/knn.so
creating stub loader for mlpack/kfn.so
creating stub loader for mlpack/nmf.so
creating stub loader for mlpack/pca.so
creating stub loader for mlpack/perceptron.so
creating stub loader for mlpack/preprocess_split.so
creating stub loader for mlpack/preprocess_binarize.so
creating stub loader for mlpack/preprocess_describe.so
creating stub loader for mlpack/radical.so
creating stub loader for mlpack/random_forest.so
creating stub loader for mlpack/krann.so
creating stub loader for mlpack/softmax_regression.so
creating stub loader for mlpack/sparse_coding.so
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/arma_numpy.py to
arma_numpy.pyc
byte-compiling
build/bdist.macosx-10.12-x86_64/egg/mlpack/test_python_binding.py to
test_python_binding.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/adaboost.py to
adaboost.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/approx_kfn.py to
approx_kfn.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/cf.py to cf.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/dbscan.py to
dbscan.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/decision_stump.py
to decision_stump.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/decision_tree.py
to decision_tree.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/det.py to det.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/emst.py to
emst.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/fastmks.py to
fastmks.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/gmm_train.py to
gmm_train.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/gmm_generate.py
to gmm_generate.pyc
byte-compiling
build/bdist.macosx-10.12-x86_64/egg/mlpack/gmm_probability.py to
gmm_probability.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/hmm_train.py to
hmm_train.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/hmm_loglik.py to
hmm_loglik.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/hmm_viterbi.py to
hmm_viterbi.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/hmm_generate.py
to hmm_generate.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/hoeffding_tree.py
to hoeffding_tree.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/kernel_pca.py to
kernel_pca.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/kmeans.py to
kmeans.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/lars.py to
lars.pyc
byte-compiling
build/bdist.macosx-10.12-x86_64/egg/mlpack/linear_regression.py to
linear_regression.pyc
byte-compiling
build/bdist.macosx-10.12-x86_64/egg/mlpack/local_coordinate_coding.py to
local_coordinate_coding.pyc
byte-compiling
build/bdist.macosx-10.12-x86_64/egg/mlpack/logistic_regression.py to
logistic_regression.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/lsh.py to lsh.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/mean_shift.py to
mean_shift.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/nbc.py to nbc.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/nca.py to nca.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/knn.py to knn.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/kfn.py to kfn.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/nmf.py to nmf.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/pca.py to pca.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/perceptron.py to
perceptron.pyc
byte-compiling
build/bdist.macosx-10.12-x86_64/egg/mlpack/preprocess_split.py to
preprocess_split.pyc
byte-compiling
build/bdist.macosx-10.12-x86_64/egg/mlpack/preprocess_binarize.py to
preprocess_binarize.pyc
byte-compiling
build/bdist.macosx-10.12-x86_64/egg/mlpack/preprocess_describe.py to
preprocess_describe.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/radical.py to
radical.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/random_forest.py
to random_forest.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/krann.py to
krann.pyc
byte-compiling
build/bdist.macosx-10.12-x86_64/egg/mlpack/softmax_regression.py to
softmax_regression.pyc
byte-compiling build/bdist.macosx-10.12-x86_64/egg/mlpack/sparse_coding.py
to sparse_coding.pyc
creating build/bdist.macosx-10.12-x86_64/egg/EGG-INFO
copying
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack.egg-info/PKG-INFO
-> build/bdist.macosx-10.12-x86_64/egg/EGG-INFO
copying
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack.egg-info/SOURCES.txt
-> build/bdist.macosx-10.12-x86_64/egg/EGG-INFO
copying
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack.egg-info/dependency_links.txt
-> build/bdist.macosx-10.12-x86_64/egg/EGG-INFO
copying
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack.egg-info/not-zip-safe
-> build/bdist.macosx-10.12-x86_64/egg/EGG-INFO
copying
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack.egg-info/requires.txt
-> build/bdist.macosx-10.12-x86_64/egg/EGG-INFO
copying
/Users/frodo/Documents/Machine_learning/mlpack-3.0.4/build/src/mlpack/bindings/python/mlpack.egg-info/top_level.txt
-> build/bdist.macosx-10.12-x86_64/egg/EGG-INFO
writing build/bdist.macosx-10.12-x86_64/egg/EGG-INFO/native_libs.txt
creating dist
creating 'dist/mlpack-3.0.4-py2.7-macosx-10.12-x86_64.egg' and adding
'build/bdist.macosx-10.12-x86_64/egg' to it
removing 'build/bdist.macosx-10.12-x86_64/egg' (and everything under it)
Creating /usr/local/lib/python2.7/site-packages/site.py
Processing mlpack-3.0.4-py2.7-macosx-10.12-x86_64.egg
creating
/usr/local/lib/python2.7/site-packages/mlpack-3.0.4-py2.7-macosx-10.12-x86_64.egg
Extracting mlpack-3.0.4-py2.7-macosx-10.12-x86_64.egg to
/usr/local/lib/python2.7/site-packages
Adding mlpack 3.0.4 to easy-install.pth file

Installed
/usr/local/lib/python2.7/site-packages/mlpack-3.0.4-py2.7-macosx-10.12-x86_64.egg
Processing dependencies for mlpack==3.0.4
Searching for pandas==0.23.4
Best match: pandas 0.23.4
Adding pandas 0.23.4 to easy-install.pth file

Using /usr/local/lib/python2.7/site-packages
Searching for numpy==1.14.2
Best match: numpy 1.14.2
Adding numpy 1.14.2 to easy-install.pth file

Using /usr/local/lib/python2.7/site-packages
Searching for Cython==0.28.4
Best match: Cython 0.28.4
Adding Cython 0.28.4 to easy-install.pth file
Installing cython script to /usr/local/bin
Installing cygdb script to /usr/local/bin
Installing cythonize script to /usr/local/bin

Using /usr/local/lib/python2.7/site-packages
Searching for python-dateutil==2.7.5
Best match: python-dateutil 2.7.5
Adding python-dateutil 2.7.5 to easy-install.pth file

Using /usr/local/lib/python2.7/site-packages
Searching for pytz==2018.7
Best match: pytz 2018.7
Adding pytz 2018.7 to easy-install.pth file

Using /usr/local/lib/python2.7/site-packages
Searching for six==1.11.0
Best match: six 1.11.0
Adding six 1.11.0 to easy-install.pth file

Using /usr/local/lib/python2.7/site-packages
Finished processing dependencies for mlpack==3.0.4
-- Installing: /usr/local/bin/mlpack_adaboost
-- Installing: /usr/local/bin/mlpack_approx_kfn
-- Installing: /usr/local/bin/mlpack_cf
-- Installing: /usr/local/bin/mlpack_dbscan
-- Installing: /usr/local/bin/mlpack_decision_stump
-- Installing: /usr/local/bin/mlpack_decision_tree
-- Installing: /usr/local/bin/mlpack_det
-- Installing: /usr/local/bin/mlpack_emst
-- Installing: /usr/local/bin/mlpack_fastmks
-- Installing: /usr/local/bin/mlpack_gmm_train
-- Installing: /usr/local/bin/mlpack_gmm_generate
-- Installing: /usr/local/bin/mlpack_gmm_probability
-- Installing: /usr/local/bin/mlpack_hmm_train
-- Installing: /usr/local/bin/mlpack_hmm_loglik
-- Installing: /usr/local/bin/mlpack_hmm_viterbi
-- Installing: /usr/local/bin/mlpack_hmm_generate
-- Installing: /usr/local/bin/mlpack_hoeffding_tree
-- Installing: /usr/local/bin/mlpack_kernel_pca
-- Installing: /usr/local/bin/mlpack_kmeans
-- Installing: /usr/local/bin/mlpack_lars
-- Installing: /usr/local/bin/mlpack_linear_regression
-- Installing: /usr/local/bin/mlpack_local_coordinate_coding
-- Installing: /usr/local/bin/mlpack_logistic_regression
-- Installing: /usr/local/bin/mlpack_lsh
-- Installing: /usr/local/bin/mlpack_mean_shift
-- Installing: /usr/local/bin/mlpack_nbc
-- Installing: /usr/local/bin/mlpack_nca
-- Installing: /usr/local/bin/mlpack_knn
-- Installing: /usr/local/bin/mlpack_kfn
-- Installing: /usr/local/bin/mlpack_nmf
-- Installing: /usr/local/bin/mlpack_pca
-- Installing: /usr/local/bin/mlpack_perceptron
-- Installing: /usr/local/bin/mlpack_preprocess_split
-- Installing: /usr/local/bin/mlpack_preprocess_binarize
-- Installing: /usr/local/bin/mlpack_preprocess_describe
-- Installing: /usr/local/bin/mlpack_preprocess_imputer
-- Installing: /usr/local/bin/mlpack_radical
-- Installing: /usr/local/bin/mlpack_random_forest
-- Installing: /usr/local/bin/mlpack_range_search
-- Installing: /usr/local/bin/mlpack_krann
-- Installing: /usr/local/bin/mlpack_softmax_regression
-- Installing: /usr/local/bin/mlpack_sparse_coding










Looking forward to your news !

Cheers

FJ

















On Wed, Dec 26, 2018 at 8:19 PM Ryan Curtin <ryan at ratml.org> wrote:

> On Fri, Dec 21, 2018 at 09:26:53PM +0000, Frodo Jedi wrote:
> > Hi Ryan,
> > I apologize for the delay of my answer, I was traveling.
>
> No worries. I took a look through the log you attached and actually it
> didn't have any of the information I needed.  So I wrote some modified
> files that will give me the output that hopefully shows what is going
> on, and if you are willing to try this out then maybe we can figure out
> what is wrong.
>
> http://www.ratml.org/misc/CMakeLists.mod.txt: replace the file
>   src/mlpack/bindings/python/CMakeLists.txt with this
>
> http://www.ratml.org/misc/setup-3.py.in: replace the file
>   src/mlpack/bindings/python/setup.py.in with this
>
> Hopefully this should give us a bit more output.  This time I'll need
> just the configuration output (i.e. the output of 'cmake ..' when you
> configure a clean project), and then the output of 'sudo make install';
> specifically, there should be some lines in there that say either
>
> running setup.py; PYTHONPATH:
> <PYTHONPATH should be printed>
>
> or, it will say
>
> no PYTHONPATH in os.environ
>
> So I'll just need to see that output plus the CMake configuration output
> and hopefully that should get us closer.  I still don't have any insight
> yet on why it is setting the PYTHONPATH for install as 'usr/...' not
> '/usr/...', but that's definitely the problem and once we can fix that
> it should install fine.
>
> --
> Ryan Curtin    | "Why is it that the landscape is moving... but the boat is
> ryan at ratml.org | still?"  - Train Driver
>
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