[mlpack] [mlpack/mlpack] Faster build times (#842)

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Fri Dec 23 05:00:45 EST 2016 

Replaced all instances of `#include <mlpack/core.hpp>` with `#include <mlpack/prereqs.hpp>`.  This doesn't affect build times when building the whole project, but it greatly reduces build times after modifying only a few files.
You can view, comment on, or merge this pull request online at:

  https://github.com/mlpack/mlpack/pull/842

-- Commit Summary --

  * Replaced all instances of `#include <mlpack/core.hpp>` with `#include <mlpack/prereqs.hpp>`.  This doesn't affect build times when building the whole project, but it greatly reduces build times after modifying only a few files.

-- File Changes --

    M src/mlpack/core/boost_backport/policy.hpp (3)
    M src/mlpack/core/data/binarize.hpp (2)
    M src/mlpack/core/data/dataset_mapper.hpp (2)
    M src/mlpack/core/data/imputation_methods/custom_imputation.hpp (2)
    M src/mlpack/core/data/imputation_methods/listwise_deletion.hpp (2)
    M src/mlpack/core/data/imputation_methods/mean_imputation.hpp (2)
    M src/mlpack/core/data/imputation_methods/median_imputation.hpp (2)
    M src/mlpack/core/data/imputer.hpp (2)
    M src/mlpack/core/data/map_policies/datatype.hpp (2)
    M src/mlpack/core/data/map_policies/increment_policy.hpp (2)
    M src/mlpack/core/data/map_policies/missing_policy.hpp (2)
    M src/mlpack/core/data/split_data.hpp (2)
    M src/mlpack/core/dists/discrete_distribution.hpp (4)
    M src/mlpack/core/dists/gamma_distribution.hpp (4)
    M src/mlpack/core/dists/gaussian_distribution.hpp (2)
    M src/mlpack/core/dists/laplace_distribution.cpp (2)
    M src/mlpack/core/dists/regression_distribution.hpp (2)
    M src/mlpack/core/kernels/cosine_distance.hpp (3)
    M src/mlpack/core/kernels/epanechnikov_kernel.hpp (3)
    M src/mlpack/core/kernels/epanechnikov_kernel_impl.hpp (1)
    M src/mlpack/core/kernels/example_kernel.hpp (2)
    M src/mlpack/core/kernels/gaussian_kernel.hpp (3)
    M src/mlpack/core/kernels/hyperbolic_tangent_kernel.hpp (2)
    M src/mlpack/core/kernels/laplacian_kernel.hpp (2)
    M src/mlpack/core/kernels/linear_kernel.hpp (2)
    M src/mlpack/core/kernels/polynomial_kernel.hpp (2)
    M src/mlpack/core/kernels/pspectrum_string_kernel.hpp (3)
    M src/mlpack/core/kernels/spherical_kernel.hpp (3)
    M src/mlpack/core/kernels/triangular_kernel.hpp (2)
    M src/mlpack/core/math/columns_to_blocks.hpp (2)
    M src/mlpack/core/math/lin_alg.cpp (3)
    M src/mlpack/core/metrics/lmetric.hpp (2)
    M src/mlpack/core/metrics/mahalanobis_distance.hpp (2)
    M src/mlpack/core/optimizers/adadelta/ada_delta.hpp (2)
    M src/mlpack/core/optimizers/adam/adam.hpp (2)
    M src/mlpack/core/optimizers/aug_lagrangian/aug_lagrangian.hpp (2)
    M src/mlpack/core/optimizers/aug_lagrangian/aug_lagrangian_function.hpp (2)
    M src/mlpack/core/optimizers/aug_lagrangian/aug_lagrangian_test_functions.hpp (2)
    M src/mlpack/core/optimizers/gradient_descent/gradient_descent.hpp (2)
    M src/mlpack/core/optimizers/gradient_descent/test_function.hpp (2)
    M src/mlpack/core/optimizers/lbfgs/lbfgs.hpp (2)
    M src/mlpack/core/optimizers/lbfgs/test_functions.hpp (2)
    M src/mlpack/core/optimizers/minibatch_sgd/minibatch_sgd.hpp (2)
    M src/mlpack/core/optimizers/rmsprop/rmsprop.hpp (2)
    M src/mlpack/core/optimizers/sdp/lrsdp.hpp (2)
    M src/mlpack/core/optimizers/sdp/lrsdp_function.hpp (2)
    M src/mlpack/core/optimizers/sdp/primal_dual.hpp (2)
    M src/mlpack/core/optimizers/sdp/sdp.hpp (3)
    M src/mlpack/core/optimizers/sgd/sgd.hpp (2)
    M src/mlpack/core/optimizers/sgd/test_function.hpp (2)
    M src/mlpack/core/tree/ballbound.hpp (2)
    M src/mlpack/core/tree/ballbound_impl.hpp (1)
    M src/mlpack/core/tree/binary_space_tree.hpp (2)
    M src/mlpack/core/tree/binary_space_tree/binary_space_tree.hpp (2)
    M src/mlpack/core/tree/binary_space_tree/breadth_first_dual_tree_traverser.hpp (2)
    M src/mlpack/core/tree/binary_space_tree/dual_tree_traverser.hpp (2)
    M src/mlpack/core/tree/binary_space_tree/mean_split.hpp (2)
    M src/mlpack/core/tree/binary_space_tree/midpoint_split.hpp (2)
    M src/mlpack/core/tree/binary_space_tree/rp_tree_max_split.hpp (2)
    M src/mlpack/core/tree/binary_space_tree/rp_tree_mean_split.hpp (3)
    M src/mlpack/core/tree/binary_space_tree/single_tree_traverser.hpp (2)
    M src/mlpack/core/tree/binary_space_tree/ub_tree_split.hpp (2)
    M src/mlpack/core/tree/binary_space_tree/vantage_point_split.hpp (3)
    M src/mlpack/core/tree/cellbound.hpp (2)
    M src/mlpack/core/tree/cosine_tree/cosine_tree.cpp (1)
    M src/mlpack/core/tree/cosine_tree/cosine_tree.hpp (2)
    M src/mlpack/core/tree/cover_tree.hpp (2)
    M src/mlpack/core/tree/cover_tree/cover_tree.hpp (3)
    M src/mlpack/core/tree/cover_tree/dual_tree_traverser.hpp (2)
    M src/mlpack/core/tree/cover_tree/dual_tree_traverser_impl.hpp (2)
    M src/mlpack/core/tree/cover_tree/first_point_is_root.hpp (2)
    M src/mlpack/core/tree/cover_tree/single_tree_traverser.hpp (2)
    M src/mlpack/core/tree/greedy_single_tree_traverser.hpp (2)
    M src/mlpack/core/tree/hollow_ball_bound.hpp (2)
    M src/mlpack/core/tree/hrectbound.hpp (2)
    M src/mlpack/core/tree/octree.hpp (2)
    M src/mlpack/core/tree/octree/dual_tree_traverser.hpp (2)
    M src/mlpack/core/tree/octree/octree.hpp (2)
    M src/mlpack/core/tree/octree/single_tree_traverser.hpp (2)
    M src/mlpack/core/tree/rectangle_tree/discrete_hilbert_value.hpp (2)
    M src/mlpack/core/tree/rectangle_tree/dual_tree_traverser.hpp (2)
    M src/mlpack/core/tree/rectangle_tree/hilbert_r_tree_descent_heuristic.hpp (2)
    M src/mlpack/core/tree/rectangle_tree/hilbert_r_tree_split.hpp (2)
    M src/mlpack/core/tree/rectangle_tree/r_plus_plus_tree_auxiliary_information.hpp (2)
    M src/mlpack/core/tree/rectangle_tree/r_plus_plus_tree_descent_heuristic.hpp (2)
    M src/mlpack/core/tree/rectangle_tree/r_plus_tree_descent_heuristic.hpp (2)
    M src/mlpack/core/tree/rectangle_tree/r_plus_tree_split.hpp (2)
    M src/mlpack/core/tree/rectangle_tree/r_star_tree_descent_heuristic.hpp (2)
    M src/mlpack/core/tree/rectangle_tree/r_star_tree_split.hpp (2)
    M src/mlpack/core/tree/rectangle_tree/r_tree_descent_heuristic.hpp (2)
    M src/mlpack/core/tree/rectangle_tree/r_tree_split.hpp (2)
    M src/mlpack/core/tree/rectangle_tree/rectangle_tree.hpp (2)
    M src/mlpack/core/tree/rectangle_tree/single_tree_traverser.hpp (2)
    M src/mlpack/core/tree/rectangle_tree/x_tree_split.hpp (2)
    M src/mlpack/core/tree/space_split/hyperplane.hpp (2)
    M src/mlpack/core/tree/space_split/mean_space_split.hpp (2)
    M src/mlpack/core/tree/space_split/midpoint_space_split.hpp (2)
    M src/mlpack/core/tree/space_split/projection_vector.hpp (2)
    M src/mlpack/core/tree/space_split/space_split.hpp (2)
    M src/mlpack/core/tree/spill_tree.hpp (2)
    M src/mlpack/core/tree/spill_tree/spill_dual_tree_traverser.hpp (2)
    M src/mlpack/core/tree/spill_tree/spill_single_tree_traverser.hpp (2)
    M src/mlpack/core/tree/spill_tree/spill_tree.hpp (2)
    M src/mlpack/core/util/param.hpp (2)
    M src/mlpack/methods/adaboost/adaboost.hpp (2)
    M src/mlpack/methods/adaboost/adaboost_main.cpp (4)
    M src/mlpack/methods/amf/amf.hpp (2)
    M src/mlpack/methods/amf/init_rules/average_init.hpp (2)
    M src/mlpack/methods/amf/init_rules/given_init.hpp (2)
    M src/mlpack/methods/amf/init_rules/random_acol_init.hpp (3)
    M src/mlpack/methods/amf/init_rules/random_init.hpp (2)
    M src/mlpack/methods/amf/termination_policies/incomplete_incremental_termination.hpp (2)
    M src/mlpack/methods/amf/termination_policies/simple_residue_termination.hpp (2)
    M src/mlpack/methods/amf/termination_policies/simple_tolerance_termination.hpp (2)
    M src/mlpack/methods/amf/termination_policies/validation_RMSE_termination.hpp (2)
    M src/mlpack/methods/amf/update_rules/nmf_als.hpp (2)
    M src/mlpack/methods/amf/update_rules/nmf_mult_dist.hpp (2)
    M src/mlpack/methods/amf/update_rules/nmf_mult_div.hpp (2)
    M src/mlpack/methods/amf/update_rules/svd_batch_learning.hpp (2)
    M src/mlpack/methods/amf/update_rules/svd_complete_incremental_learning.hpp (2)
    M src/mlpack/methods/ann/activation_functions/identity_function.hpp (2)
    M src/mlpack/methods/ann/activation_functions/logistic_function.hpp (2)
    M src/mlpack/methods/ann/activation_functions/rectifier_function.hpp (2)
    M src/mlpack/methods/ann/activation_functions/softsign_function.hpp (2)
    M src/mlpack/methods/ann/activation_functions/tanh_function.hpp (2)
    M src/mlpack/methods/ann/cnn.hpp (2)
    M src/mlpack/methods/ann/convolution_rules/fft_convolution.hpp (2)
    M src/mlpack/methods/ann/convolution_rules/naive_convolution.hpp (2)
    M src/mlpack/methods/ann/convolution_rules/svd_convolution.hpp (2)
    M src/mlpack/methods/ann/ffn.hpp (2)
    M src/mlpack/methods/ann/init_rules/kathirvalavakumar_subavathi_init.hpp (2)
    M src/mlpack/methods/ann/init_rules/nguyen_widrow_init.hpp (2)
    M src/mlpack/methods/ann/init_rules/oivs_init.hpp (2)
    M src/mlpack/methods/ann/init_rules/orthogonal_init.hpp (2)
    M src/mlpack/methods/ann/init_rules/random_init.hpp (2)
    M src/mlpack/methods/ann/init_rules/zero_init.hpp (2)
    M src/mlpack/methods/ann/layer/base_layer.hpp (2)
    M src/mlpack/methods/ann/layer/bias_layer.hpp (2)
    M src/mlpack/methods/ann/layer/binary_classification_layer.hpp (2)
    M src/mlpack/methods/ann/layer/constant_layer.hpp (2)
    M src/mlpack/methods/ann/layer/conv_layer.hpp (2)
    M src/mlpack/methods/ann/layer/dropconnect_layer.hpp (2)
    M src/mlpack/methods/ann/layer/dropout_layer.hpp (2)
    M src/mlpack/methods/ann/layer/glimpse_layer.hpp (2)
    M src/mlpack/methods/ann/layer/hard_tanh_layer.hpp (2)
    M src/mlpack/methods/ann/layer/leaky_relu_layer.hpp (2)
    M src/mlpack/methods/ann/layer/linear_layer.hpp (2)
    M src/mlpack/methods/ann/layer/log_softmax_layer.hpp (2)
    M src/mlpack/methods/ann/layer/lstm_layer.hpp (2)
    M src/mlpack/methods/ann/layer/multiclass_classification_layer.hpp (2)
    M src/mlpack/methods/ann/layer/multiply_constant_layer.hpp (2)
    M src/mlpack/methods/ann/layer/negative_log_likelihood_layer.hpp (2)
    M src/mlpack/methods/ann/layer/one_hot_layer.hpp (2)
    M src/mlpack/methods/ann/layer/pooling_layer.hpp (2)
    M src/mlpack/methods/ann/layer/recurrent_layer.hpp (2)
    M src/mlpack/methods/ann/layer/reinforce_normal_layer.hpp (2)
    M src/mlpack/methods/ann/layer/softmax_layer.hpp (2)
    M src/mlpack/methods/ann/layer/sparse_bias_layer.hpp (2)
    M src/mlpack/methods/ann/layer/sparse_input_layer.hpp (2)
    M src/mlpack/methods/ann/layer/sparse_output_layer.hpp (2)
    M src/mlpack/methods/ann/layer/vr_class_reward_layer.hpp (2)
    M src/mlpack/methods/ann/network_util.hpp (2)
    M src/mlpack/methods/ann/performance_functions/cee_function.hpp (2)
    M src/mlpack/methods/ann/performance_functions/mse_function.hpp (2)
    M src/mlpack/methods/ann/performance_functions/sparse_function.hpp (2)
    M src/mlpack/methods/ann/performance_functions/sse_function.hpp (2)
    M src/mlpack/methods/ann/pooling_rules/max_pooling.hpp (2)
    M src/mlpack/methods/ann/pooling_rules/mean_pooling.hpp (2)
    M src/mlpack/methods/ann/rnn.hpp (2)
    M src/mlpack/methods/approx_kfn/approx_kfn_main.cpp (2)
    M src/mlpack/methods/approx_kfn/drusilla_select.hpp (2)
    M src/mlpack/methods/approx_kfn/qdafn.hpp (3)
    M src/mlpack/methods/cf/cf.hpp (2)
    M src/mlpack/methods/cf/cf_main.cpp (4)
    M src/mlpack/methods/cf/svd_wrapper.hpp (2)
    M src/mlpack/methods/decision_stump/decision_stump.hpp (2)
    M src/mlpack/methods/decision_stump/decision_stump_main.cpp (4)
    M src/mlpack/methods/det/det_main.cpp (3)
    M src/mlpack/methods/det/dt_utils.hpp (2)
    M src/mlpack/methods/det/dtree.hpp (2)
    M src/mlpack/methods/emst/dtb.hpp (2)
    M src/mlpack/methods/emst/dtb_rules.hpp (2)
    M src/mlpack/methods/emst/dtb_stat.hpp (2)
    M src/mlpack/methods/emst/edge_pair.hpp (2)
    M src/mlpack/methods/emst/emst_main.cpp (2)
    M src/mlpack/methods/emst/union_find.hpp (2)
    M src/mlpack/methods/fastmks/fastmks.hpp (2)
    M src/mlpack/methods/fastmks/fastmks_main.cpp (3)
    M src/mlpack/methods/fastmks/fastmks_model.hpp (13)
    M src/mlpack/methods/fastmks/fastmks_rules.hpp (3)
    M src/mlpack/methods/fastmks/fastmks_stat.hpp (2)
    M src/mlpack/methods/gmm/diagonal_constraint.hpp (2)
    M src/mlpack/methods/gmm/eigenvalue_ratio_constraint.hpp (2)
    M src/mlpack/methods/gmm/em_fit.hpp (3)
    M src/mlpack/methods/gmm/gmm.hpp (2)
    M src/mlpack/methods/gmm/gmm_generate_main.cpp (2)
    M src/mlpack/methods/gmm/gmm_probability_main.cpp (2)
    M src/mlpack/methods/gmm/gmm_train_main.cpp (2)
    M src/mlpack/methods/gmm/no_constraint.hpp (2)
    M src/mlpack/methods/gmm/positive_definite_constraint.hpp (2)
    M src/mlpack/methods/hmm/hmm.hpp (3)
    M src/mlpack/methods/hmm/hmm_generate_main.cpp (2)
    M src/mlpack/methods/hmm/hmm_loglik_main.cpp (2)
    M src/mlpack/methods/hmm/hmm_regression.hpp (2)
    M src/mlpack/methods/hmm/hmm_train_main.cpp (2)
    M src/mlpack/methods/hmm/hmm_util.hpp (2)
    M src/mlpack/methods/hmm/hmm_util_impl.hpp (2)
    M src/mlpack/methods/hmm/hmm_viterbi_main.cpp (2)
    M src/mlpack/methods/hoeffding_trees/binary_numeric_split_info.hpp (2)
    M src/mlpack/methods/hoeffding_trees/categorical_split_info.hpp (2)
    M src/mlpack/methods/hoeffding_trees/gini_impurity.hpp (2)
    M src/mlpack/methods/hoeffding_trees/hoeffding_categorical_split.hpp (2)
    M src/mlpack/methods/hoeffding_trees/hoeffding_numeric_split.hpp (2)
    M src/mlpack/methods/hoeffding_trees/hoeffding_tree.hpp (3)
    M src/mlpack/methods/hoeffding_trees/hoeffding_tree_main.cpp (3)
    M src/mlpack/methods/hoeffding_trees/numeric_split_info.hpp (2)
    M src/mlpack/methods/kernel_pca/kernel_pca.hpp (2)
    M src/mlpack/methods/kernel_pca/kernel_pca_main.cpp (16)
    M src/mlpack/methods/kernel_pca/kernel_rules/naive_method.hpp (2)
    M src/mlpack/methods/kernel_pca/kernel_rules/nystroem_method.hpp (2)
    M src/mlpack/methods/kmeans/allow_empty_clusters.hpp (2)
    M src/mlpack/methods/kmeans/kill_empty_clusters.hpp (2)
    M src/mlpack/methods/kmeans/kmeans.hpp (2)
    M src/mlpack/methods/kmeans/kmeans_main.cpp (2)
    M src/mlpack/methods/kmeans/max_variance_new_cluster.hpp (2)
    M src/mlpack/methods/kmeans/random_partition.hpp (2)
    M src/mlpack/methods/kmeans/refined_start.hpp (2)
    M src/mlpack/methods/kmeans/sample_initialization.hpp (3)
    M src/mlpack/methods/lars/lars.cpp (2)
    M src/mlpack/methods/lars/lars.hpp (2)
    M src/mlpack/methods/lars/lars_main.cpp (3)
    M src/mlpack/methods/linear_regression/linear_regression.cpp (1)
    M src/mlpack/methods/linear_regression/linear_regression.hpp (2)
    M src/mlpack/methods/linear_regression/linear_regression_main.cpp (3)
    M src/mlpack/methods/local_coordinate_coding/lcc.cpp (1)
    M src/mlpack/methods/local_coordinate_coding/lcc.hpp (2)
    M src/mlpack/methods/local_coordinate_coding/local_coordinate_coding_main.cpp (3)
    M src/mlpack/methods/logistic_regression/logistic_regression.hpp (2)
    M src/mlpack/methods/logistic_regression/logistic_regression_function.hpp (2)
    M src/mlpack/methods/logistic_regression/logistic_regression_main.cpp (3)
    M src/mlpack/methods/lsh/lsh_main.cpp (3)
    M src/mlpack/methods/lsh/lsh_search.hpp (2)
    M src/mlpack/methods/lsh/lsh_search_impl.hpp (3)
    M src/mlpack/methods/mean_shift/mean_shift.hpp (2)
    M src/mlpack/methods/mean_shift/mean_shift_main.cpp (2)
    M src/mlpack/methods/mvu/mvu.hpp (2)
    M src/mlpack/methods/mvu/mvu_main.cpp (2)
    M src/mlpack/methods/naive_bayes/naive_bayes_classifier.hpp (2)
    M src/mlpack/methods/naive_bayes/naive_bayes_classifier_impl.hpp (2)
    M src/mlpack/methods/naive_bayes/nbc_main.cpp (4)
    M src/mlpack/methods/nca/nca.hpp (2)
    M src/mlpack/methods/nca/nca_main.cpp (5)
    M src/mlpack/methods/nca/nca_softmax_error_function.hpp (2)
    M src/mlpack/methods/neighbor_search/kfn_main.cpp (2)
    M src/mlpack/methods/neighbor_search/knn_main.cpp (4)
    M src/mlpack/methods/neighbor_search/neighbor_search.hpp (3)
    M src/mlpack/methods/neighbor_search/neighbor_search_impl.hpp (2)
    M src/mlpack/methods/neighbor_search/neighbor_search_stat.hpp (2)
    M src/mlpack/methods/neighbor_search/sort_policies/furthest_neighbor_sort.hpp (2)
    M src/mlpack/methods/neighbor_search/sort_policies/nearest_neighbor_sort.hpp (2)
    M src/mlpack/methods/neighbor_search/unmap.hpp (2)
    M src/mlpack/methods/nmf/nmf_main.cpp (3)
    M src/mlpack/methods/nystroem_method/kmeans_selection.hpp (2)
    M src/mlpack/methods/nystroem_method/nystroem_method.hpp (2)
    M src/mlpack/methods/nystroem_method/ordered_selection.hpp (2)
    M src/mlpack/methods/nystroem_method/random_selection.hpp (2)
    M src/mlpack/methods/pca/decomposition_policies/exact_svd_method.hpp (2)
    M src/mlpack/methods/pca/decomposition_policies/quic_svd_method.hpp (2)
    M src/mlpack/methods/pca/decomposition_policies/randomized_svd_method.hpp (2)
    M src/mlpack/methods/pca/pca.hpp (2)
    M src/mlpack/methods/pca/pca_impl.hpp (3)
    M src/mlpack/methods/pca/pca_main.cpp (3)
    M src/mlpack/methods/perceptron/initialization_methods/random_init.hpp (2)
    M src/mlpack/methods/perceptron/initialization_methods/zero_init.hpp (2)
    M src/mlpack/methods/perceptron/learning_policies/simple_weight_update.hpp (2)
    M src/mlpack/methods/perceptron/perceptron.hpp (2)
    M src/mlpack/methods/perceptron/perceptron_main.cpp (4)
    M src/mlpack/methods/preprocess/preprocess_binarize_main.cpp (3)
    M src/mlpack/methods/preprocess/preprocess_describe_main.cpp (3)
    M src/mlpack/methods/preprocess/preprocess_imputer_main.cpp (3)
    M src/mlpack/methods/preprocess/preprocess_split_main.cpp (3)
    M src/mlpack/methods/quic_svd/quic_svd.hpp (2)
    M src/mlpack/methods/radical/radical.cpp (2)
    M src/mlpack/methods/radical/radical.hpp (2)
    M src/mlpack/methods/radical/radical_main.cpp (4)
    M src/mlpack/methods/randomized_svd/randomized_svd.hpp (2)
    M src/mlpack/methods/range_search/range_search.hpp (2)
    M src/mlpack/methods/range_search/range_search_main.cpp (2)
    M src/mlpack/methods/range_search/range_search_stat.hpp (2)
    M src/mlpack/methods/range_search/rs_model.cpp (1)
    M src/mlpack/methods/rann/krann_main.cpp (2)
    M src/mlpack/methods/rann/ra_model_impl.hpp (1)
    M src/mlpack/methods/rann/ra_query_stat.hpp (2)
    M src/mlpack/methods/rann/ra_search.hpp (2)
    M src/mlpack/methods/rann/ra_search_impl.hpp (2)
    M src/mlpack/methods/rann/ra_util.hpp (2)
    M src/mlpack/methods/regularized_svd/regularized_svd.hpp (2)
    M src/mlpack/methods/regularized_svd/regularized_svd_function.hpp (2)
    M src/mlpack/methods/rmva/rmva.hpp (2)
    M src/mlpack/methods/rmva/rmva_main.cpp (3)

-- Patch Links --

https://github.com/mlpack/mlpack/pull/842.patch
https://github.com/mlpack/mlpack/pull/842.diff

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